It is possible to customize initialization sequence of components. By default, the sequence is not specified. You can change the sequence using up/down buttons. To open this view, click Window > Show View > Other... and select Processor Expert > Initialization Sequence.
Third column displays any conflicts or component specific messages. Initialization of processor component is always first. Disabled components are also listed (even if the code is not generated). This allows to create configuration for the disabled component to re-enable them. You can unspecify the initialization order of given component by clicking on the Don't care button.